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Topic 21: Biotechnology and Genetic Modification

IGCSE Biology (0610) Study Guide — Extended
The last topic on the syllabus, and one of the shortest. There is very little to know here, which means the examiner has to separate candidates on something else — and that something else is precision of language. Two things carry most of the marks: the six-step genetic modification chain, in order, with the right enzyme doing the right job; and the bread versus biofuel contrast, where one reaction serves two industries because they keep opposite products.

Hi Tara. This is the last one. Every other topic on 0610 is now behind you, which means this guide can lean on any of them without apology — and it will, because Topic 21 is almost entirely made of ideas you already own, put to industrial use.

Here is the shape. 21.1 asks why bacteria, of all things, and the answer is four specific reasons, none of which is “they are simple”. 21.2, 21.3 and 21.4 are all one syllabus sub-topic, split three ways here because Cambridge has bundled three unrelated processes together: yeast and its one reaction; three industrial enzymes; and the fermenter that grows the organisms. 21.5 is genetic modification — the definition, the four named uses, and the six-step chain that is the highest-value thing in the topic. 21.6 is the checklist for the night before.

Three warnings that will each save you marks. First: a restriction enzyme cuts, and DNA ligase joins. Swapping them is the error examiners report most often here, and it costs two marks at once. Second: enzymes are denatured, never killed — the yeast can be killed, its enzymes cannot. Third: when a question says discuss, it wants both sides and a judgement, and the most confident one-sided answer in the room cannot score more than half.

21.1 Why Bacteria Are Useful ▼

Four Reasons, and None of Them Is “Because They Are Simple”

Almost everything in this topic is done by bacteria or to bacteria, so Cambridge starts by asking why they are the organism of choice. There are four reasons on your syllabus, two Core and two Supplement, and each of them is a mark. What is not a mark is the answer everybody writes first — that bacteria are useful because they are small, or simple, or easy. Say what they actually do.

The reasonWhat it meansWhy it matters industrially
Rapid reproduction rate
Core
A bacterium divides to give two bacteria, and in good conditions it can do that roughly every 20 minutes.A few cells become billions overnight. You do not have to wait a generation for your product, and you never run out of the organism.
Ability to make complex molecules
Core
Bacteria have ribosomes and the rest of the machinery for assembling amino acids into proteins.Given the right gene they will build a large protein such as human insulin — something no simple industrial process can do.
Few ethical concerns
Supplement
People raise far fewer objections to growing and manipulating bacteria than to the same work on animals.Work can go ahead, and be scaled up, with fewer restrictions than research using animals attracts.
Presence of plasmids
Supplement
A plasmid is a small circle of DNA, separate from the main circular DNA of the cell.It is a ready-made way in. A gene can be put into a plasmid and the plasmid can be taken up by the bacterium.

You met the last of those in 2.1, in the list of bacterial cell parts: cell wall, cell membrane, cytoplasm, ribosomes, circular DNA and plasmids. At the time the plasmid was just another word to learn. This is the topic where it turns out to matter.

Fig. 1.1 — a bacterial cell, and where the plasmids sitThe plasmids are drawn far larger than they really are, so that you can see them.cell wallcell membranecytoplasmribosomesmain circular DNAplasmidplasmidA plasmid is a small circle of DNA, separate from the main circular DNA.One bacterium may hold several of them, and it can take one in from outside.Rapid reproduction + able to make complex molecules + plasmids + few ethical concerns
The two circles of DNA are not the same thing. The big one is the main circular DNA of the cell; the small ones are plasmids, and they are drawn here far bigger than they really are so that you can see them.
The word Cambridge is listening for is “separate”

A plasmid is a small circle of DNA that is separate from the main circular DNA. An answer that says a plasmid is “part of the bacterial DNA” or “a piece of the chromosome” loses the mark, because being separate is the whole point — it can be taken out, worked on and put back without touching the rest of the cell.

And notice the shape: circular, both of them. Bacteria have no nucleus and no linear chromosomes, which is why the word chromosome is best avoided here altogether.

Worked example A single bacterium is placed in a fermenter and divides every 20 minutes. How many bacteria are there after 6 hours, assuming nothing limits growth?

This is the kind of arithmetic Cambridge uses to make the phrase “rapid reproduction rate” mean something. Do it in doublings, never in multiplications of 20.

Step 1 — count the doublings
6 hours is 360 minutes. One doubling every 20 minutes gives 360 ÷ 20 = 18 doublings.
Step 2 — each doubling multiplies by 2
Starting from 1 cell, the number after 18 doublings is 218.
Step 3 — work it out in steps you can do without a calculator
210 = 1024, and 28 = 256. So 218 = 1024 × 256 ≈ 262 000.
About 260 000 bacteria from one cell in six hours. That is what a rapid reproduction rate buys you, and it is why the answer to “why bacteria?” is not “they are small”.
“Nothing limits growth” is doing a lot of work in that question

In a real fermenter the population would not keep doubling. Nutrients run out, waste products build up and the pH drifts, which is exactly why a fermenter controls those things. You will meet all of that in 21.4 — and a question that asks why the real curve flattens off is asking you to name those limits.

A four-word memory hook

Fast · Complex · Ethical · Plasmids. Fast reproduction, complex molecules, few ethical concerns, and plasmids to carry a gene in. Four reasons, four marks, and the last two are the Supplement ones you will be the only person in the room to remember.

Check Yourself: Why Bacteria Are Useful
8 multiple choice questions. Click an option to check your answer.
Your Score 0 / 8
Question 1
Which pair of reasons is the Core answer to why bacteria are used in biotechnology?
A They are small and they have no nucleus.
B They contain plasmids and they raise few ethical concerns.
C They reproduce rapidly and they can make complex molecules.
D They are simple organisms and they are found everywhere.
The Core objective names exactly two things: the rapid reproduction rate and the ability to make complex molecules. Plasmids and ethical concerns are the two Supplement reasons — correct biology, but they answer the Supplement version of the question. Size, absence of a nucleus and being widespread are true of bacteria and are not on the list at all.
Question 2
A plasmid is best described as
A a section of the main circular DNA that carries useful genes.
B a small circle of DNA that is separate from the main circular DNA.
C a protein that carries genes into a bacterium.
D the region of the cytoplasm where the DNA is found.
Two words carry the mark: circular and separate. Calling a plasmid part of the main DNA destroys the reason it is useful — it can be removed and returned on its own. A plasmid is DNA, not protein, so it is not a carrier in the sense of a molecule that transports something.
Question 3
A student writes that bacteria are used in genetic modification “because they are simple organisms that are easy to grow”. How many marks would this score?
A None, because neither part is one of the reasons on the syllabus.
B One, for the idea that they are easy to grow.
C Two, because both statements are true.
D One, because being simple explains why they can make proteins.
Both halves are true statements about bacteria and neither is a reason the syllabus lists. This is the most common way of losing all four marks on a straightforward question. The examinable reasons are rapid reproduction, complex molecules, few ethical concerns and plasmids.
Question 4
One bacterium divides every 30 minutes. Starting from one cell, roughly how many are there after 5 hours?
A 1024
B 300
C 150
D 60
5 hours is 300 minutes, which is 300 ÷ 30 = 10 doublings, and 210 = 1024. The tempting wrong answer is 300, which comes from multiplying rather than doubling — a population that doubles grows by a power of two, not in a straight line.
Question 5
Which structure in a bacterial cell assembles amino acids into a protein?
A The plasmids
B The cell wall
C The main circular DNA
D The ribosomes
Protein assembly happens at the ribosomes, which is exactly why bacteria can make a human protein once they carry the human gene. The main circular DNA and the plasmids carry the instructions; they do not do the building. This links straight back to the bacterial cell parts you learned in 2.1.
Question 6
Why does the presence of plasmids make bacteria particularly suitable for genetic modification?
A Plasmids make the bacterium reproduce faster.
B A gene can be put into a plasmid, and a bacterium can take a plasmid up.
C Plasmids allow the bacterium to survive at high temperatures.
D Plasmids contain the ribosomes needed to make a protein.
The plasmid is the way in. Because it is small, circular and separate, it can be cut open, given an extra gene and returned to a bacterium. Plasmids do not speed up reproduction, have nothing to do with heat tolerance, and contain no ribosomes — ribosomes sit free in the cytoplasm.
Question 7
“Few ethical concerns” is given as a reason for using bacteria. This means that
A genetic modification of bacteria is entirely without risk.
B no laws apply to work with bacteria.
C bacteria cannot be harmed because they are not alive.
D fewer objections are raised to manipulating and growing bacteria than to similar work on animals.
It is a statement about how people respond, not a claim that the work is risk-free or unregulated. Bacteria are certainly alive — they carry out all seven characteristics from 1.1 — so the option saying they are not alive is wrong on basic biology as well as on this point.
Question 8
A company needs 10 kg of a human protein every week. Which single feature of bacteria makes this possible where a mammal could not supply it?
A Their small size, which means more of them fit into the fermenter.
B Their cell wall, which protects the protein from being broken down.
C Their rapid reproduction rate, which lets the culture be scaled up enormously in a day or two.
D Their lack of a nucleus, which means the gene is expressed faster.
Scale comes from reproduction rate. A mammal takes months to reach adult size and yields the protein once; a bacterial culture doubles every twenty minutes and can be harvested repeatedly. Small size is not the reason, the cell wall does not protect the product, and the absence of a nucleus is not on the syllabus as a reason.
21.2 Yeast — Biofuel and Bread-Making ▼

Cambridge puts yeast, the industrial enzymes and fermenters together in one sub-topic, 21.2 Biotechnology, but they are three unrelated processes with nothing in common except that a living thing is doing the work. They are split across three sections here so that each one gets taught properly — yeast now, industrial enzymes in 21.3, fermenters in 21.4.

One Reaction You Already Know

Yeast is a fungus. Not a bacterium — that is worth fixing now, because a question that says “name the microorganism” will not accept bacterium, and the fermenter objective in 21.4 deliberately says bacteria and fungi.

When yeast respires anaerobically — without oxygen — it does this, and you met it in 12.3:

glucose → ethanol + carbon dioxide
In yeast, in the absence of oxygen. Some energy is released, but far less than in aerobic respiration, because the ethanol still holds most of it.

That is the whole of the science in this section. Two industries use it, they are examined constantly, and the examiners are testing one thing: which of the two products you actually want.

Fig. 2.1 — one reaction, two industries, two different useful productsAnaerobic respiration in yeast. The reaction does not change; only which product you keep does.glucose → ethanol + carbon dioxidein yeast, without oxygen (anaerobic respiration)BREAD-MAKINGglucose → ethanol + carbon dioxidekeep the CARBON DIOXIDEThe bubbles of CO₂ are trapped in the dough,so it rises and the baked loaf is light.The ethanol evaporates in the heat of the oven,which is why bread is not alcoholic.CO₂ = product. ethanol = lost.BIOFUELglucose → ethanol + carbon dioxidekeep the ETHANOLThe ethanol is separated from the mixture andburned as a fuel, on its own or mixed with petrol.The carbon dioxide is simply the by-product ofthe same reaction.ethanol = product. CO₂ = by-product.Same organism. Same reaction. Same two products. The only difference is which one you wanted.
The same reaction, drawn twice, with a different product ringed each time. The reaction does not know what you want out of it.

Ethanol for Biofuels

Sugar from a crop — sugar cane, maize, sugar beet — is dissolved in water and yeast is added. Air is kept out, so the yeast respires anaerobically and converts the sugar to ethanol. The ethanol is then separated from the mixture and burned as a fuel, on its own or mixed with petrol.

Here the ethanol is the useful product. The carbon dioxide is simply the by-product, and it bubbles off.

Carbon Dioxide for Bread

Yeast is mixed with flour, sugar and warm water and the dough is kneaded and left in a warm place. The yeast respires the sugar anaerobically. The carbon dioxide is trapped as bubbles in the stretchy dough, so the dough rises. When the loaf goes into the oven, the bubbles expand further and the heat kills the yeast, so the rising stops — and the ethanol evaporates, which is why bread is not alcoholic. The holes you can see in a slice of bread are those trapped bubbles.

Here the carbon dioxide is the useful product. The ethanol is lost.

The one sentence that answers half the questions in this sub-topic

Same organism, same reaction, same two products — opposite one kept. In bread you want the carbon dioxide and lose the ethanol; in biofuel you want the ethanol and lose the carbon dioxide. If a question in this sub-topic looks hard, check first whether it is really just asking you which product is wanted.

Do not write “fermentation” when the question asks for a process

Fermentation is a fine word, and on its own it is a weak answer. The process is anaerobic respiration, and the mark is usually for the word anaerobic — it is what makes the yeast produce ethanol instead of the carbon dioxide and water it would produce with oxygen.

Similarly, do not write that the yeast “makes alcohol” without saying why oxygen is excluded. If oxygen were present, the yeast would respire aerobically and there would be no ethanol at all.

Worked example Dough was left to rise for 40 minutes at five temperatures. The increase in height was: 5°C 2 mm, 20°C 14 mm, 35°C 31 mm, 55°C 9 mm, 75°C 0 mm. Explain the pattern.

Two different explanations are needed — one for the rise and one for the fall — and a single sentence about “the best temperature” will not get either mark.

Step 1 — say what is being measured
The dough rises because carbon dioxide from anaerobic respiration in the yeast is trapped in it. More rise means faster respiration, so the graph is really a graph of enzyme activity.
Step 2 — explain the rise from 5°C to 35°C
Raising the temperature gives molecules more kinetic energy, so enzyme and substrate molecules collide more often and more successfully. The rate of respiration goes up, so more carbon dioxide is produced per minute.
Step 3 — explain the fall after 35°C
Above the optimum the enzymes in the yeast are denatured. The shape of the active site changes, the substrate no longer fits, and the reaction slows. By 75°C the yeast enzymes are completely denatured and no gas is produced at all.
Step 4 — name the optimum carefully
The data show the optimum is at or near 35°C. You cannot say it is exactly 35°C, because the readings jump from 20 to 35 to 55 — the true optimum lies somewhere in that region, and a careful answer says so.
Rise = faster collisions; fall = denaturation; optimum at or close to 35°C. The word “killed” earns nothing for the enzymes — enzymes are molecules, and molecules are denatured.
Baking kills the yeast; heat denatures its enzymes

Both sentences are correct and they are not interchangeable. The yeast is a living organism, so it can be killed. Its enzymes are protein molecules, so they are denatured. Use the right word for the right thing and you will never lose the mark that the word “killed” costs most candidates.

Check Yourself: Yeast, Biofuel and Bread
10 multiple choice questions. Click an option to check your answer.
Your Score 0 / 10
Question 1
Complete the word equation for anaerobic respiration in yeast: glucose → ?
A carbon dioxide + water
B lactic acid
C ethanol + oxygen
D ethanol + carbon dioxide
In yeast, anaerobic respiration gives ethanol and carbon dioxide. Carbon dioxide and water is the aerobic equation; lactic acid is what muscle produces anaerobically, which is the swap examiners rely on. Oxygen is never a product of respiration of any kind.
Question 2
In bread-making, the useful product of anaerobic respiration in yeast is
A ethanol, because it gives bread its flavour.
B carbon dioxide, because it makes the dough rise.
C water, because it keeps the dough moist.
D lactic acid, because it makes the dough stretchy.
The carbon dioxide is trapped in the dough and makes it rise; the ethanol evaporates in the oven and is lost. The whole point of this sub-topic is that the same reaction serves two industries because they keep different products.
Question 3
In the production of biofuel using yeast, the carbon dioxide is
A a by-product, because the ethanol is what is collected and burned.
B the useful product, because it is used as a fuel gas.
C not produced at all, because the yeast respires aerobically.
D the substance that is fermented to make the fuel.
The ethanol is the fuel; the carbon dioxide is simply what else comes out of the same reaction. If the yeast respired aerobically there would be no ethanol, so the third option would destroy the process rather than describe it.
Question 4
Why is air excluded from the vessel used to make ethanol for biofuel?
A To stop the ethanol evaporating.
B To keep the temperature constant.
C So the yeast respires anaerobically and produces ethanol rather than only carbon dioxide and water.
D To prevent the yeast from reproducing.
With oxygen present the yeast would respire aerobically, giving carbon dioxide and water and no ethanol at all. Excluding air is what forces the anaerobic pathway. It is not about evaporation, temperature or stopping reproduction — the yeast must keep reproducing.
Question 5
Yeast is
A a bacterium.
B a fungus.
C a protoctist.
D a virus.
Yeast is a single-celled fungus, which is why the fermenter objective in 21.4 says “bacteria and fungi”. Calling it a bacterium is the single most common error in this sub-topic, and a question asking you to name the type of organism will not accept it.
Question 6
Bread does not taste of alcohol because
A the ethanol evaporates during baking.
B no ethanol is produced when yeast respires in dough.
C the ethanol is broken down by enzymes in the flour.
D the carbon dioxide reacts with the ethanol.
Ethanol is produced — the reaction is identical to the one used for biofuel — but it evaporates in the heat of the oven. Saying that no ethanol is made contradicts the equation you have just learned, and the flour contains no enzyme for breaking ethanol down.
Question 7
Dough rises faster at 35°C than at 15°C mainly because
A carbon dioxide is more soluble at the higher temperature.
B the dough is more stretchy at the higher temperature.
C the yeast reproduces by mitosis at the higher temperature.
D the enzymes in the yeast work faster at the higher temperature, so more carbon dioxide is produced.
The rate of the reaction is set by enzyme activity: warmer molecules collide more often and more successfully. The stretchiness of the dough matters for trapping the gas, but it does not explain the rate of production. Note also that if carbon dioxide were more soluble it would be less likely to form bubbles.
Question 8
Dough left at 70°C does not rise at all. The best explanation is that
A the enzymes in the yeast have been killed.
B the carbon dioxide escapes too quickly at that temperature.
C the enzymes in the yeast have been denatured.
D there is not enough oxygen at that temperature.
Enzymes are protein molecules, so the correct word is denatured — the active site changes shape and the substrate no longer fits. “Killed” can be said of the yeast but never of an enzyme, and that single word choice is a mark. Oxygen is irrelevant, since this is anaerobic respiration.
Question 9
A student writes: “In bread-making the yeast ferments and this makes the dough rise.” The main weakness of this answer is that it
A uses the word yeast rather than fungus.
B never names the gas or the process, so it gives the marker nothing to tick.
C is too short to be a full sentence.
D suggests that the dough rises before the yeast respires.
The marking points here are anaerobic respiration and carbon dioxide, and neither word appears. “Ferments” is a vague near-synonym; it does not name the gas, and naming the gas is the mark. Length is never the problem — missing key words is.
Question 10
Ethanol made by yeast is described as a biofuel because
A it is made from a crop that was grown recently, rather than from a fossil fuel.
B it burns without producing carbon dioxide.
C it is produced inside a living organism, so it contains no chemicals.
D it releases more energy per gram than petrol.
The prefix means the fuel comes from recently living material — sugar from a crop — rather than from fossil fuel. Burning ethanol certainly does produce carbon dioxide. And every substance is a chemical, including one made inside a cell, so the third option is not a scientific statement.
21.3 Enzymes in Industry — Pectinase, Lactase and Washing Powders ▼

Three Enzymes Doing Three Industrial Jobs

This is the part of 21.2 where everything you learned about enzymes in 5.1 and 5.2 comes back and earns money. Three uses are named on your syllabus — pectinase in fruit juice, enzymes in biological washing powders, and lactase for lactose-free milk — and every one of them is examined through the same two ideas: an enzyme breaks a large molecule into smaller ones, and it has an optimum temperature above which it is denatured.

Pectinase in Fruit Juice Production

Plant cell walls and the material between plant cells contain pectin, which holds the cells together. Crush an apple without doing anything else and you get a thick, cloudy pulp that only releases some of its juice.

Pectinase breaks down the pectin. The cells come apart, the pulp collapses, and the juice runs out freely. Two things improve as a result: the volume of juice obtained from the same mass of fruit goes up, and the juice is clearer, because the fragments that made it cloudy have been broken down.

Fig. 3.1 — juice obtained from 100 g of apple pulpEach sample stood for 30 minutes at the temperature shown before the juice was collected.020406080volume of juice/ cm³42nopectinase58pectinase20°C71pectinase40°C49pectinase60°C38pectinase80°CPectinase breaks down pectin in the cell walls, so more juice is released and it runs more freely.The rise to 40°C is molecules colliding faster; the fall after it is the enzyme being denatured.
Both effects of temperature in one chart: adding pectinase raises the yield, warming it raises it further, and overheating it destroys the advantage completely.
Read the first bar before you say anything about the enzyme

The bar for “no pectinase” is the control. Without it you could not say that the extra juice came from the enzyme rather than from standing for 30 minutes. If a question asks why that sample was included, that is the answer — and if a question asks you to design the experiment, that is the bar you must remember to include.

Notice the last bar as well. At 80°C the yield is lower than with no enzyme at all. The enzyme is denatured, so it does nothing; the small extra drop is just the pulp behaving slightly differently when hot. An answer that says “the enzyme works more slowly at 80°C” misses the point — it has stopped working, permanently.

Biological Washing Powders

A washing powder described as biological contains enzymes. The stains that are hardest to shift are large insoluble molecules stuck to the fibres:

  • Proteases break down protein stains — blood, egg, grass, sweat — into amino acids and other small soluble molecules.
  • Lipases break down fat stains — grease, butter, oil — into fatty acids and glycerol.

The products are small and soluble, so they dissolve in the water and are rinsed away. That is the whole mechanism, and the mark is for the words broken down into small soluble molecules, not for “the enzymes remove the stain”.

Fig. 3.2 — percentage of a protein stain removed at different washing temperaturesTwo washing powders, identical cloth, identical stain, 40-minute wash each time.02040608010020304050607080washing temperature / °Cstain removed/ %powder P (contains enzymes)powder Q (no enzymes)Powder P peaks near 40°C and then collapses — the enzymes are denatured, so their active sites no longer fit the stain.
Powder P contains enzymes; powder Q does not. The two curves cross, and where they cross is the whole question.
Worked example Using Fig. 3.2, explain why powder P is better than powder Q at 40°C but worse at 70°C.

Two answers are needed, not one, and the second one is where the marks are.

Step 1 — at 40°C
Powder P contains enzymes. At 40°C the enzymes are close to their optimum temperature, so proteases break the protein stain down into small soluble molecules that wash away. Powder Q has no enzymes, so it can only lift what the detergent alone can lift, and it removes far less.
Step 2 — at 70°C
Above about 50°C the enzymes in powder P are denatured: the active site changes shape and the stain molecules no longer fit, so the enzymes stop working altogether. Powder Q is unaffected because it contains no enzymes, and its performance keeps improving because hot water dissolves grease better and the detergent works more effectively.
Step 3 — state the practical consequence
So a biological powder must be used at a low or moderate temperature. That is not a drawback but the main selling point: a 40°C wash uses far less electricity than a 70°C wash, and it is gentler on the fabric and on any colours in it.
P wins at 40°C because its enzymes are near their optimum; P loses at 70°C because those enzymes are denatured. Both halves must be there. Half an answer scores half the marks.
Designing the investigation — the version Cambridge actually asks for

“Investigate the use of biological washing powders” is in the syllabus, so it can be set as an experiment to plan. A safe design: identical squares of the same cloth, each with the same volume of the same stain, left for the same time before washing. Wash each square in the same volume of water containing the same mass of powder, for the same length of time, with the same amount of stirring.

Change one thing only — the temperature, or the type of powder. Include a square washed in water alone as a control. Judge the result by comparing each square against a printed colour scale, and get a second person to judge them as well, because deciding how clean something looks is subjective. That word is worth a mark on its own when you are asked to evaluate the method.

Lactase and Lactose-Free Milk

Supplement

Milk contains the sugar lactose. Digesting it needs the enzyme lactase, and a large proportion of the world’s adults do not produce enough of it. Undigested lactose passes into the large intestine, where bacteria act on it, causing pain, wind and diarrhoea.

The solution is to do the digestion before the milk is drunk. Lactase is added to the milk, and it breaks the lactose down into glucose and galactose, which are small, soluble and absorbed without any lactase of your own. The result is sold as lactose-free milk.

Two consequences follow, and both are examined:

  • The milk tastes slightly sweeter, because glucose and galactose taste sweeter than the lactose they came from. No sugar has been added — one sugar has been broken into two.
  • People who cannot digest lactose can drink it without the symptoms, so they keep milk in their diet.
The commonest wrong sentence in this whole topic

“Lactose-free milk has had the lactose removed.” It has not. The lactose is broken down into glucose and galactose by lactase, and both of those products stay in the milk. Nothing is filtered out and nothing is thrown away.

If you can write “lactase breaks lactose down into glucose and galactose” without hesitating, you have this objective. Note the spelling too: lactose is the sugar, lactase is the enzyme, and the “-ase” ending means enzyme every time.

Enzyme names tell you the answer

Pectin→ase breaks down pectin. Lact→ase breaks down lactose. Prote→ase breaks down protein. Lip→ase breaks down lipids, which are fats. Nothing in this section requires you to memorise which enzyme does what — the name is the answer, as long as you write the products as well as the substrate.

Check Yourself: Enzymes in Industry
12 multiple choice questions. Click an option to check your answer.
Your Score 0 / 12
Question 1
Pectinase is used in fruit juice production because it
A breaks down the sugars in the fruit, making the juice sweeter.
B breaks down pectin, so more juice is released and the juice is clearer.
C kills bacteria in the juice so it keeps longer.
D thickens the juice by breaking down water-soluble molecules.
Pectin holds plant cells together, so breaking it down releases the juice and removes what made it cloudy. Pectinase does not act on sugars — breaking down sugar would make less sweet juice, not more — and enzymes are not antibacterial.
Question 2
In an experiment on pectinase, one sample of apple pulp was left with no enzyme added. The purpose of that sample was to
A show the maximum yield that is possible.
B give the pulp time to warm up before the enzyme is added.
C test whether the apples used were fresh.
D act as a control, so any extra juice can be attributed to the enzyme.
Without a sample lacking the enzyme, you could not tell whether the extra juice came from the pectinase or simply from standing for 30 minutes. It is the comparison that makes the result mean anything — a control gives you something to measure against, not the best possible result.
Question 3
Apple pulp treated with pectinase gives 71 cm³ of juice at 40°C but only 38 cm³ at 80°C. The best explanation is that at 80°C
A the pectinase has been denatured, so it can no longer break down pectin.
B the pectinase is working too fast and destroys the juice.
C the juice evaporates at the higher temperature.
D the pectin has become insoluble at the higher temperature.
Above the optimum the shape of the active site changes and the substrate no longer fits — the enzyme is denatured, permanently. Note that 38 cm³ is below the no-enzyme figure of 42 cm³, which shows the enzyme is contributing nothing at all rather than merely working slowly.
Question 4
A biological washing powder differs from a non-biological one because it contains
A more detergent.
B bleach.
C enzymes.
D a higher concentration of soap.
The word biological means contains enzymes, usually proteases and lipases. Everything else in the two powders can be identical, which is exactly why an experiment comparing them is a fair test of what the enzymes do.
Question 5
Which enzyme in a biological washing powder would be most useful on a blood stain?
A A lipase
B A protease
C A carbohydrase
D A pectinase
Blood stains are largely protein, so a protease is what breaks them down — into amino acids and other small soluble molecules that rinse away. A lipase deals with grease, a carbohydrase with starch or sugars, and pectinase acts on plant cell walls, which are not present in blood.
Question 6
Biological washing powders are recommended for washes at 40°C rather than 70°C because
A the enzymes are denatured at the higher temperature.
B the enzymes work more slowly at the higher temperature.
C the higher temperature makes the stains more soluble than the enzymes can manage.
D the enzymes dissolve at the higher temperature.
Denaturation is permanent and complete, which is why the curve for a biological powder collapses rather than levelling off. “Works more slowly” describes what happens below the optimum and is the answer most often given here. Enzymes are already dissolved in the wash water, so the last option is not a mechanism at all.
Question 7
Using a biological powder at a lower temperature has the practical advantage that
A the wash takes less time.
B the enzymes last longer inside the packet.
C less powder is needed per wash.
D less electricity is used to heat the water, and the fabric is treated more gently.
Heating water is where the energy in a wash goes, so a 40°C wash is markedly cheaper than a 70°C one, and lower temperatures are kinder to fibres and dyes. The other three are not consequences of the temperature.
Question 8
A student judges cleanliness by looking at each cloth square and deciding which is whitest. The main weakness of this method is that it is
A too slow to be practical.
B affected by the temperature of the water.
C subjective, so two people may not agree on the order.
D unable to detect protein stains.
Anything judged by eye is subjective, and that single word is regularly a mark. The improvement is to use a printed colour scale, or a light meter, or to have more than one person judge without knowing which square is which.
Question 9
Lactase is used to produce lactose-free milk. The lactase
A breaks lactose down into glucose and galactose.
B removes the lactose from the milk by filtering it out.
C converts lactose into a protein that people can digest.
D prevents lactose from forming in the milk.
The lactose is broken down, not removed — both products stay in the milk. That misunderstanding is the most common error in the whole of 21.2. Lactose is a sugar, so it cannot become a protein, and it is present in the milk before any treatment begins.
Question 10
Lactose-free milk tastes slightly sweeter than ordinary milk because
A sugar is added during the process.
B glucose and galactose taste sweeter than the lactose they were made from.
C the lactase itself tastes sweet.
D the fat has been removed, which makes the sugar easier to taste.
One sugar molecule has been split into two, and both taste sweeter than the original. Nothing is added and nothing is taken away, which is a neat demonstration that the lactose really has been broken down rather than removed.
Question 11
Which of these is a genuine benefit of lactose-free milk for someone who cannot produce enough lactase?
A They gain the ability to produce lactase again.
B The milk provides more energy than ordinary milk.
C The milk no longer contains any sugar.
D They can drink milk without the pain and diarrhoea that undigested lactose causes.
The point is that the digestion has already been done outside the body. It does not change what the person can produce, and the milk still contains sugar — glucose and galactose — with essentially the same energy content as before.
Question 12
Which statement about all three industrial enzymes in this section is true?
A Each builds a larger molecule from smaller ones.
B Each works best at 70°C or above.
C Each breaks a larger molecule down into smaller ones, and each has an optimum temperature.
D Each is produced by yeast.
Pectinase, protease, lipase and lactase are all doing the same kind of job — breaking large molecules into small soluble ones — and all of them are proteins with an optimum temperature above which they are denatured. Spotting that they are one idea in three costumes is the fastest way to revise this sub-topic.
21.4 Fermenters and the Conditions They Control ▼
Supplement — all of 21.4

Everything in this section is Supplement content, which for you means it is all examinable and most of the class will skip it.

A Very Large Tank With Very Tight Controls

A fermenter is a vessel used for the large-scale production of useful products by bacteria and fungi. Three products are named on your syllabus, and it is worth knowing which organism makes each:

ProductMade byWhat it is for
InsulinGenetically modified bacteriaThe hormone that lowers blood glucose. Used to treat people whose own supply is inadequate.
PenicillinA fungus (Penicillium)An antibiotic — it kills bacteria, which is why it does nothing against a virus. You met that in 15.1.
MycoproteinA fungusA protein-rich food, grown as a meat substitute.

Notice that only the first of those involves genetic modification. Penicillin and mycoprotein come from fungi doing what they already do naturally, on an industrial scale. A question that assumes every fermenter contains modified bacteria has misread the syllabus.

Fig. 4.1 — an industrial fermenter, shown in sectionFive things are controlled, and each one has a piece of hardware doing the controlling.Mnutrient inletsugar and other nutrients addedpH probeacid or alkali added to hold pH steadyculture of bacteria or fungusgrowing in liquidfiltersterile air inletoxygen for aerobic respirationtemperature probereads the temperature all the timewater jacketcarries away the heat that respiration releasespaddle stirrerkeeps it mixed and evenly warmcold water inwarm water outoutlet tapproduct drawn off, waste products removedControlled: temperature · pH · oxygen · nutrient supply · waste products
Every label on this diagram exists to control one of the five conditions. If you can name the part, you can name the condition, and the other way round.

The Five Conditions, and the Hardware That Controls Each One

This is the objective that carries the marks: describe and explain the conditions that need to be controlled in a fermenter. There are five, and a good answer says for each one why it matters and how it is controlled.

ConditionWhy it must be controlledHow it is controlled
TemperatureThe enzymes of the organism have an optimum temperature. Too cold and growth is slow; too hot and the enzymes are denatured and the culture dies. Respiration in a huge culture releases a great deal of heat, so the tank warms itself.A temperature probe monitors it and a water jacket carries the excess heat away. Cold water flows in and warm water flows out.
pHEnzymes also have an optimum pH. Waste products released by the culture are often acidic, so the pH drifts downwards during the run and the enzymes work less well.A pH probe monitors it continuously and small amounts of acid or alkali are added to hold it steady.
OxygenMost of these cultures respire aerobically, and aerobic respiration releases far more energy than anaerobic. That energy is needed both for growth and for making the product.Sterile air is bubbled in at the bottom through a filter, and the paddle stirrer spreads the bubbles through the whole tank.
Nutrient supplyThe organism needs a carbon source, usually a sugar, plus other nutrients. If they run out, growth stops and so does production.Nutrients are added through the nutrient inlet, and the stirrer makes sure they reach every part of the tank rather than settling.
Waste productsWaste builds up as the culture grows. It can be toxic to the organism and it changes the pH, so growth slows and eventually stops.Waste is drawn off through the outlet, and in a continuous process fresh medium replaces it.
Five conditions, one hand

T · pH · O · N · W — Temperature, pH, Oxygen, Nutrients, Waste. Five fingers, five conditions. Then for each one ask the two questions the mark scheme asks: why does it matter? and what piece of hardware deals with it? A six-mark question on a fermenter is almost always three conditions × two marks.

How a fermenter is used, start to finish

  1. Sterilise. The empty fermenter is cleaned and sterilised with steam. The nutrient medium (water, a sugar such as glucose, and a source of nitrogen) is sterilised too. This kills any microorganisms already present, so none can compete for the nutrients or contaminate the product.
  2. Inoculate. A small, pure culture of the chosen organism is added: genetically modified bacteria for insulin, the fungus Penicillium for penicillin, and a fungus for mycoprotein.
  3. Grow under control. The organism grows and reproduces. The probes, the water jacket, the sterile air supply, the pH control and the stirrer hold the five conditions at their best values, so growth and production are as fast as possible.
  4. Harvest. After a set time the contents are run off (a batch process). Alternatively, some liquid is drawn off continuously and replaced with fresh medium (a continuous process).
  5. Separate and purify the product. Penicillin is released by the fungus into the liquid: the fungus is filtered off, and the penicillin is extracted from the liquid and purified. Insulin is made by the bacteria: it is separated from the bacteria and the liquid, and purified so that it is safe to inject. Mycoprotein is the fungus itself: the fungal mass is filtered out of the liquid and then processed into food.
How a fermenter is used, start to finish1 Sterilisefermenter andmedium (steam)2 Add mediumwater, sugar,nitrogen source3 Inoculatepure culture ofthe microorganism4 Growtemperature, pH,oxygen, nutrients,waste controlled5 Harvestthen separate andpurify the productpenicillin: filter off the fungus, extract from the liquidinsulin: separate from the bacteria, purifymycoprotein: filter off the fungus, process into food
The same five steps for all three products; only the last step, getting the product out, differs.

Why use a fermenter at all? It makes very large amounts. The product is the same every time, because the conditions are the same every time. And it works all year round, whatever the weather.

The stirrer is not there to be busy

If you are asked why the fermenter has a paddle stirrer, there are three creditable answers and you should give more than one: it keeps the oxygen bubbles spread through the liquid rather than letting them rise straight out; it keeps the nutrients evenly distributed so no region runs short; and it keeps the temperature even, so there are no hot spots near the middle where heat builds up.

It also stops the microorganisms settling at the bottom, where they would have neither oxygen nor nutrients.

How a fermenter is kept sterile — and how it is not

Before the run, the vessel is sterilised and the air entering it is filtered, so no other microorganisms get in to compete for nutrients or contaminate the product. This is why the diagram says sterile air inlet.

What does not happen is heating the tank during the run to keep it sterile. That would denature the enzymes of the very organism you are growing. It is a favourite distractor because it sounds sensible, and it kills the culture.

Note also that sterility is not one of the five named conditions. If the question says “state the five conditions that are controlled”, sterility is not one of your five.

Worked example In a fermenter producing mycoprotein, the mass of fungus rises steeply for 20 hours, then levels off, even though nutrients are still being added. Suggest two reasons.

This is an AO2 question: nothing here is a fact you can recall, so work from what limits a growing population.

Step 1 — rule out the obvious
Nutrients are still being added, so a shortage of nutrients is not the answer. The question has closed that door deliberately, and an answer that says “the food ran out” will score nothing.
Step 2 — think about what the culture produces
Waste products accumulate. They can be toxic to the fungus, and they are often acidic, which lowers the pH away from the optimum for the enzymes. Either effect slows growth.
Step 3 — think about what the culture consumes that is not being added
Oxygen. A very dense culture uses oxygen faster than it can be bubbled in and dissolved, so oxygen becomes the limiting factor, aerobic respiration slows and less energy is available for growth.
Step 4 — a third possibility worth a mark
Space. In a very dense culture the organisms are competing for room as well as for supplies, and the tank has a fixed volume.
Any two of: build-up of toxic waste products; fall in pH caused by that waste; oxygen becoming limiting as the culture gets dense. Not “the nutrients ran out” — the question rules that out in its own stem.
Check Yourself: Fermenters
10 multiple choice questions. Click an option to check your answer.
Your Score 0 / 10
Question 1
Which of these products is made in a fermenter by a fungus rather than by bacteria?
A Insulin
B Lactic acid
C Penicillin
D Human growth hormone
Penicillin comes from the fungus Penicillium — which is where the name comes from — and mycoprotein is also fungal. Insulin is made by genetically modified bacteria. Assuming that everything in a fermenter is a bacterium is a common and expensive error.
Question 2
Why does a large fermenter need a water jacket?
A The reaction inside absorbs heat, so warm water must be supplied.
B Respiration by the culture releases heat, which would otherwise denature the enzymes of the organism.
C It keeps the outside of the vessel cool enough for workers to touch.
D It sterilises the contents by keeping them hot.
A dense culture respiring aerobically releases a great deal of heat, and unremoved it would push the temperature past the optimum and denature the enzymes. Note that the jacket carries heat away; a fermenter’s problem is almost always too much heat, not too little.
Question 3
The air pumped into a fermenter is passed through a filter first. This is to
A remove carbon dioxide from the air.
B cool the air before it reaches the culture.
C increase the concentration of oxygen in the air.
D prevent other microorganisms entering and contaminating the culture.
A filter removes microorganisms, which would otherwise compete for nutrients and spoil the product. A filter cannot change the composition of the air, so it neither removes carbon dioxide nor concentrates oxygen.
Question 4
The pH inside a fermenter tends to fall during a long run. The usual reason is that
A the culture releases acidic waste products.
B oxygen dissolving in the liquid makes it acidic.
C the nutrients added are acidic.
D the temperature rise makes the liquid acidic.
Waste from the growing culture is typically acidic, which is why a probe monitors pH and alkali can be added. Dissolved oxygen does not acidify water to any significant extent, and the nutrient supply is chosen not to disturb the pH.
Question 5
Which is not one of the five conditions the syllabus says are controlled in a fermenter?
A Oxygen
B Waste products
C Light intensity
D Nutrient supply
The five are temperature, pH, oxygen, nutrient supply and waste products. Light is irrelevant — the organisms in a fermenter are bacteria and fungi, neither of which photosynthesises, so a fermenter has no windows.
Question 6
A student suggests keeping a fermenter sterile by heating the contents to 100°C every few hours during the run. This would fail because
A the heat would evaporate the nutrients.
B the pH would rise sharply.
C the paddle stirrer would stop working at that temperature.
D it would denature the enzymes of the organism being grown and kill the culture.
Heating the vessel does sterilise it — which is exactly what is done before the run — but doing it during the run destroys the very organism you are growing. Sterility during the run comes from filtering the incoming air, not from heat.
Question 7
The paddle stirrer in a fermenter helps production because it
A keeps oxygen, nutrients and heat evenly spread through the whole vessel.
B increases the rate at which the organisms reproduce by breaking them apart.
C raises the temperature of the culture by friction.
D forces waste products out through the outlet tap.
Three separate marks live in the first option: bubbles distributed, nutrients distributed, no hot or cold regions. Breaking the organisms apart would reduce the yield, not raise it, and the small amount of heat from stirring is not why it is there.
Question 8
In a fermenter producing insulin, the organism is a genetically modified bacterium. Its energy for growth and for making insulin comes mainly from
A anaerobic respiration, which is why the vessel is sealed.
B aerobic respiration, which is why sterile air is bubbled in.
C photosynthesis, using light from the laboratory.
D the heat supplied by the water jacket.
Aerobic respiration releases far more energy per glucose molecule than anaerobic, which is why oxygen is one of the five controlled conditions and why the air inlet exists. The water jacket removes heat rather than supplying it, and heat is not a usable energy source for a cell in any case.
Question 9
A fermenter culture stops growing after 30 hours although nutrients are still being supplied. Which explanation is best supported by the information given?
A The nutrients have run out.
B The temperature probe has failed.
C Toxic waste products have accumulated and the pH has moved away from the optimum.
D The organisms have used up all the nitrogen in the air above the liquid.
The stem rules out a nutrient shortage in its own wording, so any answer built on that scores nothing — read the stem before choosing. Waste accumulation and the pH drift it causes are the standard explanations, along with oxygen becoming limiting in a dense culture. Nitrogen gas is not used by these organisms.
Question 10
Which product listed in the syllabus is a food rather than a medicine?
A Insulin
B Penicillin
C Lactase
D Mycoprotein
Mycoprotein is a protein-rich food grown from a fungus. Insulin is a hormone and penicillin an antibiotic, so both are medicines. Lactase is an enzyme used in food processing rather than a product of a fermenter on this syllabus.
21.5 Genetic Modification — the Six-Step Process and Its Uses ▼

The Definition, Word for Word

Genetic modification is changing the genetic material of an organism
by removing, changing or inserting individual genes.
Three verbs, and the last word matters: individual genes, not chromosomes and not whole genomes.

Learn that sentence. It is a mark on its own and it is also a defence against the commonest muddle in this sub-topic — the idea that genetic modification means moving a whole chromosome, or breeding two organisms together. Neither. One gene at a time.

The Four Examples the Syllabus Names

Gene inserted into…What it gives the organismWhy anyone wants it
Bacteria — a human geneThe bacteria make a human protein.Human insulin can be produced in enormous quantity in a fermenter. It is identical to the human protein, so it works properly in a human body.
Crop plants — herbicide resistanceThe crop survives a herbicide that kills the weeds around it.Weeds can be sprayed off without harming the crop, so the crop is not competing for light, water and mineral ions.
Crop plants — insect pest resistanceThe crop resists insect pests.Less of the crop is eaten, so yield rises, and less insecticide has to be sprayed.
Crop plants — improved nutritional qualityThe crop makes a substance it did not make before.Rice has been modified to make a substance the body converts into vitamin A, in regions where deficiency causes blindness.

The Six-Step Process

Supplement

This is the part of the topic that most rewards being organised. Cambridge sets it as an ordered chain, marks it one step at a time, and the example is always the same: making a human protein in bacteria. Six steps, six marking points. Anything you can say about the process that is not one of these six steps is worth nothing, so do not spend time on it.

Step 1 — worked in full

The whole chain, with every step in place.

Watch what a complete answer looks like before you try one. Read it left to right along the top row, then left to right along the bottom row.

Fig. 5.2 — making a human protein in bacteria, in six stepsSix steps, in this order. Cambridge marks them one by one.1Cut the gene outa restriction enzyme cutsthe human gene out of human DNA,leaving sticky ends2Cut the plasmid openthe SAME restriction enzyme cutsthe bacterial plasmid, givingcomplementary sticky ends3Join them togetherDNA ligase joins the geneinto the plasmid, forming arecombinant plasmid4Put it into bacteriathe recombinant plasmids areinserted into bacteria5Let them multiplythe bacteria containing therecombinant plasmid multiply6Collect the proteinthe human gene is expressed,so the bacteria make thehuman proteinRestriction enzyme CUTS (steps 1 and 2). DNA ligase JOINS (step 3). Never the other way round.
Six panels, six marking points. The arrows matter as much as the boxes: this is an ordered process and an answer that gives the steps in the wrong order loses marks.

1 — a restriction enzyme cuts the human gene out of human DNA. The cut is staggered, not straight across, so each end of the cut is left with a short single-stranded overhang. Those overhangs are called sticky ends.

2 — the same restriction enzyme cuts the bacterial plasmid open. This is the step candidates skip, and it is where the cleverness of the method lives. Because it is the same enzyme, it cuts in the same way, so the plasmid is left with sticky ends that are complementary to the ones on the gene. What sticks out on one is exactly the gap on the other.

3 — DNA ligase joins the human gene into the plasmid. The sticky ends pair up because they are complementary, and ligase seals the joins. The plasmid now contains DNA from two sources, so it is called a recombinant plasmid.

4 — the recombinant plasmids are inserted into bacteria. Your syllabus says in as many words that the specific details are not required, so do not learn a method and do not invent one. “Inserted into bacteria” is the whole marking point.

5 — the bacteria containing the recombinant plasmid multiply. This is where the rapid reproduction rate from 21.1 pays off: one modified cell becomes billions, and every one of them carries the human gene.

6 — the human gene is expressed, so the bacteria make the human protein. The word expressed is the mark. It means the gene is actually being used to make its protein rather than just sitting there.

Fig. 5.1 — what a restriction enzyme actually does to DNANo base sequences are shown — they are not on your syllabus. Think of the cut ends as shapes.1intact DNA, with the restriction enzyme in placerestrictionenzymeIt cuts the two strands at different points — a staggered cut, not a straight one.2the staggered cut leaves single-stranded overhangs — sticky endshuman DNA carrying the geneplasmid, cut openthe top strand sticks out herethe bottom strand sticks out hereThe two overhangs are COMPLEMENTARY — what sticks out on one is exactly the gap on the other.That is the whole reason for cutting both with the SAME restriction enzyme.3DNA ligase joins them, and the plasmid is now recombinantDNA ligase seals the joinRestriction enzyme CUTS. DNA ligase JOINS. If you remember one thing from this topic, make it that.
What steps 1 to 3 look like close up. There are no base sequences here because they are not on your syllabus — treat a sticky end as a shape that only fits its own partner.
The single most valuable sentence in Topic 21

A restriction enzyme cuts. DNA ligase joins. Swapping those two is the error examiners report most often in this topic, and it wrecks two marks at once because the steps then come out in the wrong order.

A hook that works: ligase is a ligature — a stitch, something that ties two things together. And a restriction enzyme restricts the DNA by chopping it into pieces.

Step 2 — one step is missing

Step 3 has been removed. Write it out before you open the answer.

You need the enzyme, what it does, and the name of what you end up with. Three things, and the mark scheme wants all three.

Fig. 5.3 — making a human protein in bacteria, in six stepsThe steps that have been removed are the ones you write.1Cut the gene outa restriction enzyme cutsthe human gene out of human DNA,leaving sticky ends2Cut the plasmid openthe SAME restriction enzyme cutsthe bacterial plasmid, givingcomplementary sticky ends3?you write this step4Put it into bacteriathe recombinant plasmids areinserted into bacteria5Let them multiplythe bacteria containing therecombinant plasmid multiply6Collect the proteinthe human gene is expressed,so the bacteria make thehuman protein
Five steps are done. Supply the sixth — the one in the middle of the top row.

DNA ligase joins the human gene into the plasmid, forming a recombinant plasmid.

Check your version against three separate things. Did you name DNA ligase, not just “an enzyme”? Did you say it joins rather than sticks or attaches? And did you use the word recombinant, which is the name of the product and a mark in its own right?

One more check that catches people out: the gene goes into the plasmid, not into the bacterium. That happens at step 4, and running the two together loses one of them.

Step 3 — two steps are missing

Steps 1 and 2 have been removed — the two cutting steps.

Careful here. These are two separate marking points even though the same enzyme does both, and the second one has an extra word in it that the first does not.

Fig. 5.4 — making a human protein in bacteria, in six stepsThe steps that have been removed are the ones you write.1?you write this step2?you write this step3Join them togetherDNA ligase joins the geneinto the plasmid, forming arecombinant plasmid4Put it into bacteriathe recombinant plasmids areinserted into bacteria5Let them multiplythe bacteria containing therecombinant plasmid multiply6Collect the proteinthe human gene is expressed,so the bacteria make thehuman protein
Four steps are done. Supply the first two.

1 — a restriction enzyme cuts the human gene out of the human DNA, leaving sticky ends.

2 — the same restriction enzyme cuts the bacterial plasmid, leaving complementary sticky ends.

The extra word in step 2 is complementary, and it is the reason the whole method works. If you cut the plasmid with a different restriction enzyme, its sticky ends would be a different shape and the gene would not fit. That is why an examiner will accept “the same enzyme” as a marking point on its own.

A second check: it is sticky ends, plural, and they are single-stranded overhangs left by a staggered cut. If your answer said the enzyme cuts the DNA straight across, the rest of the process cannot happen.

Now you do it

All six steps have gone. Write the whole chain out on paper first — six numbered lines, in order — and then fill in the five key terms below.

Fig. 5.5 — making a human protein in bacteria, in six stepsNothing is given. Write all six on paper, then check the five key terms.1?you write this step2?you write this step3?you write this step4?you write this step5?you write this step6?you write this step
The blank chain. If you can fill this in from memory you have the highest-value objective in Topic 21.
The type of enzyme that cuts the gene out
What the staggered cut leaves at each end
The enzyme that joins the gene into the plasmid
What the plasmid is called once the gene is in it
What happens to the human gene inside the bacteria (one word)
  1. A restriction enzyme cuts the human gene out of human DNA, leaving sticky ends.
  2. The same restriction enzyme cuts the bacterial plasmid, leaving complementary sticky ends.
  3. DNA ligase joins the human gene into the plasmid, forming a recombinant plasmid.
  4. The recombinant plasmids are inserted into bacteria.
  5. The bacteria containing the recombinant plasmid multiply.
  6. The human gene is expressed, so the bacteria make the human protein.

Spelling is not marked strictly, but these five terms are, so it is worth getting them exactly right: restriction enzyme, sticky ends, DNA ligase, recombinant plasmid, expressed.

Genetically Modifying Crops — Both Sides

Supplement

Your syllabus says discuss the advantages and disadvantages of genetically modifying crops, including soya, maize and rice. “Discuss” is a command word with a precise meaning: give both sides, supported, and then say what you conclude from the evidence you have given. Cambridge is marking the balance and the reasoning, not your opinion, and a passionate answer for or against that gives only one side cannot score more than half.

AdvantagesDisadvantages
Higher yield. Insect-resistant maize loses less of the crop to pests, so more food comes off the same area of land.Genes can spread. Pollen from a herbicide-resistant crop can reach a wild relative, so a weed inherits the resistance and the herbicide no longer controls it.
Less insecticide. A crop that resists its pests may need little or no spraying, which is cheaper for the farmer and affects fewer other species.Effects on other insects. A crop that makes an insecticidal substance may also harm insects that are not pests, including pollinators, reducing biodiversity.
Weeds controlled without harming the crop. Herbicide-resistant soya can be sprayed while it is growing, so the crop is not competing with weeds for light, water and mineral ions.Pests can become resistant. Insects that survive the modified crop reproduce, so over years the pest population becomes resistant and the advantage is lost — the same natural selection you met in 18.3.
Improved nutritional quality. Rice modified to make a substance the body converts into vitamin A could reduce deficiency in regions where rice is the main food.Cost and dependence. Modified seed is usually bought each year from the company that produced it, which can be difficult for farmers with little money.
Crops can be grown in more places, and a larger harvest from the same land can mean less new land is cleared.Reduced genetic variation. If everyone grows one modified variety, the crop is a monoculture with little variation, so a new disease could destroy all of it — the risk you met in 18.1.
Fewer applications of chemicals can mean less run-off into rivers and less fuel used driving machinery over the fields.Uncertainty and choice. Long-term effects on health and on ecosystems are not fully known, and some people object to the technology in principle or want the food labelled so they can choose.
How to write a “discuss” answer that scores full marks

Pick two advantages and two disadvantages and give each one a reason, not just a label. “Higher yield” on its own is weak; “higher yield, because less of the crop is eaten by insect pests” is a mark.

Then write a conclusion that refers back to what you said. Something like: “The nutritional and yield advantages are large where food is short, but the risk of resistance spreading to wild plants is real, so the case is strongest for crops grown where there are no close wild relatives.” That is a judgement drawn from evidence, which is what the command word asks for.

What loses marks: listing four points on one side and none on the other; writing that GM is dangerous or that GM is safe without support; and confusing genetic modification with selective breeding.

Genetic modification is not selective breeding

Selective breeding (18.4) uses variation that already exists within a species. You choose the individuals with the feature you want, breed them, and repeat over many generations. Nothing new is introduced.

Genetic modification transfers an individual gene, can move it between different species, and does it in one generation. That is why a human gene can end up in a bacterium, which no amount of selective breeding could ever achieve.

A question that asks you to compare them is asking for those three differences: what is moved, whether it crosses species, and how long it takes.

The chain in six words

Cut · Cut · Join · Insert · Multiply · Express. Six words, six marks. Then hang the detail on each: cut what, with what, leaving what; join with what, forming what; insert into what; multiply why; express to make what.

Check Yourself: Genetic Modification
14 multiple choice questions. Click an option to check your answer.
Your Score 0 / 14
Question 1
Genetic modification is defined as
A changing the genetic material of an organism by removing, changing or inserting individual genes.
B breeding two organisms with useful features to produce improved offspring.
C transferring a whole chromosome from one organism into another.
D growing an organism in conditions that change the way its genes work.
Learn the definition word for word — it contains three verbs and the words individual genes. The second option is selective breeding, the third is what most people wrongly imagine genetic modification to be, and the fourth describes an environmental effect rather than a change to the DNA.
Question 2
Which enzyme cuts DNA in the process of genetic modification?
A DNA ligase
B A restriction enzyme
C A protease
D Lactase
Restriction enzyme cuts, ligase joins. Swapping them is the most common error in Topic 21, and it costs two marks at once because the six steps then come out in the wrong order. A protease breaks down protein, and lactase breaks down lactose, so neither goes anywhere near DNA.
Question 3
Sticky ends are produced because the restriction enzyme
A cuts both strands at exactly the same point, leaving flat ends.
B adds extra bases to the end of each strand.
C joins the two ends of the DNA together in a circle.
D cuts the two strands of DNA at different points, leaving single-stranded overhangs.
The cut is staggered, and that is precisely what leaves the short overhangs. A straight cut would leave no overhang and nothing for the plasmid to pair with. Enzymes that cut do not add bases, and joining into a circle is what ligase does later.
Question 4
The plasmid is cut with the same restriction enzyme as the human DNA so that
A the plasmid is cut into the same number of pieces.
B the enzyme is not wasted.
C its sticky ends are complementary to those on the human gene.
D the plasmid and the gene end up the same length.
Complementary sticky ends are the whole reason for using the same enzyme — what sticks out on one is exactly the gap on the other, so only the right pieces pair up. This is the step candidates most often leave out, and it is a mark on its own.
Question 5
A plasmid that contains DNA from two different sources is called
A a modified chromosome.
B a recombinant plasmid.
C a hybrid gene.
D a sticky plasmid.
Recombinant is the word the mark scheme prints, and it is worth a mark by itself. Note that it is still a plasmid — not a chromosome, and not a gene — and the word describes where its DNA came from, not what it is made of.
Question 6
Put these steps in the correct order: (i) bacteria multiply; (ii) DNA ligase joins the gene into the plasmid; (iii) restriction enzyme cuts the human gene out; (iv) recombinant plasmids are inserted into bacteria.
A iii, iv, ii, i
B ii, iii, i, iv
C iv, iii, ii, i
D iii, ii, iv, i
Cut the gene out, join it into the plasmid, put the plasmid into the bacteria, then let the bacteria multiply. The most tempting wrong order puts the plasmid into the bacterium before the gene has been joined in, which would achieve nothing at all.
Question 7
The final step of the process is described as the gene being expressed. This means that
A the gene is copied into every new bacterium.
B the gene is removed from the plasmid and released.
C the gene is used by the bacterium to make the protein it codes for.
D the protein is pushed out of the bacterial cell.
Expressed means the gene is actually being used to make its protein rather than simply being present. Copying into daughter cells is what happens when the bacteria multiply, which is the step before, and a gene is never removed from the plasmid at the end.
Question 8
Which of these is an example of genetic modification named in the syllabus?
A Inserting a gene into a crop plant to make it resistant to insect pests.
B Crossing two varieties of wheat to combine their useful features.
C Spraying a crop with a herbicide to kill weeds.
D Choosing the highest-yielding cows to breed from each year.
Only the first involves inserting a gene. The second and fourth are selective breeding, which uses variation that already exists inside a species, and the third is simply a farming practice with no change to any organism’s DNA.
Question 9
The specific method used to get the recombinant plasmid into the bacterium is
A the one thing you must describe in detail to gain the mark.
B carried out using a restriction enzyme.
C the same as the way the gene was cut out.
D not required by the syllabus, so “inserted into bacteria” is a complete answer.
The syllabus says in as many words that the specific details are not required. That is a gift: write “the recombinant plasmids are inserted into bacteria” and move on. Spending a paragraph inventing a method costs you time and cannot earn anything.
Question 10
Why is a human protein made by genetically modified bacteria particularly suitable for treating a person?
A It is stronger than the natural human protein.
B It is identical to the protein the person would normally make, because it is made from the human gene.
C It is cheaper to make than any other medicine.
D It cannot cause any side effects because it is natural.
The gene is human, so the protein made from it is the human protein. That is why it functions properly in a human body. Being cheaper is often true but is not what makes it suitable, and no medicine can be guaranteed free of side effects.
Question 11
A herbicide-resistance gene spreading from a modified crop to a related wild plant would be a problem because
A the wild plant would become poisonous to insects.
B the crop would lose its own resistance.
C the wild plant would become a weed that the herbicide no longer controls.
D the herbicide would become more toxic to humans.
Pollen carries the gene, and a weed carrying it survives the spray. This is the standard disadvantage of herbicide-resistant crops. It has no effect on the crop’s own resistance, and it does not change the chemical nature of the herbicide.
Question 12
Which is a genuine advantage of growing an insect-resistant maize variety?
A The maize can be grown without any water.
B The maize will never be affected by disease.
C Weeds cannot grow near the maize.
D Less of the crop is eaten, so the yield is higher and less insecticide has to be sprayed.
Resistance to insect pests raises yield and cuts spraying — two linked advantages. It says nothing about water, nothing about disease caused by fungi or bacteria, and nothing about weeds, which is what herbicide resistance addresses.
Question 13
An examination question says “Discuss the advantages and disadvantages of genetically modifying crops. [6]”. Which approach scores best?
A A list of six advantages, since the technology is clearly beneficial.
B Two advantages and two disadvantages, each explained, followed by a conclusion drawn from them.
C A strongly argued case that GM crops should be banned.
D A definition of genetic modification followed by the six-step process.
“Discuss” requires both sides plus a judgement. A one-sided answer, however well argued, cannot reach full marks, and describing the process instead answers a different question altogether. Explaining each point is what turns a list into an argument.
Question 14
The main difference between genetic modification and selective breeding is that genetic modification
A can move an individual gene between different species, and works in one generation.
B produces offspring that are genetically identical to their parents.
C uses only variation that already exists within a species.
D takes many more generations to produce a result.
Selective breeding is limited to variation already present in the species and needs many generations; genetic modification transfers a single gene, can cross species, and does it in one step. Note that the third and fourth options both describe selective breeding, which is the swap the question is testing.
21.6 Exam Technique and the Vocabulary That Scores ▼

The Night Before

Topic 21 is short. There is less to know here than in almost any other topic on the syllabus, which means the marks are decided almost entirely by whether you use the exact word. This section is the list of words, plus the shape of the answers they belong in.

The Vocabulary That Scores

Say thisNot thisWhy it matters
a restriction enzyme cutsligase cutsThe swap is the most-reported error in this topic and costs two marks, because the steps then come out in the wrong order.
DNA ligase joinsa restriction enzyme joins / ligase sticks“Joins” is the marking word. “Sticks” and “attaches” are usually let through, but there is no reason to gamble.
complementary sticky endsmatching / identical sticky endsComplementary is the printed word, and it is the reason the same enzyme must be used on both.
a recombinant plasmida modified plasmid / a new plasmidA mark on its own. It names a plasmid holding DNA from two sources.
the gene is expressedthe gene works / the gene switches onExpressed means the gene is being used to make its protein. It is the final marking point of the six.
the enzyme is denaturedthe enzyme is killed / dies / breaksEnzymes are molecules. Molecules are denatured. Only organisms can be killed — the yeast can be killed, its enzymes cannot.
lactose is broken down into glucose and galactosethe lactose is removedNothing is taken out of lactose-free milk. One sugar is split into two, and both stay in the milk.
a plasmid is separate from the main circular DNAa plasmid is part of the bacterial DNABeing separate is what makes it usable. An answer that makes it part of the main DNA has removed the reason it is useful.
anaerobic respiration in yeastfermentationFermentation is a loose word. The mark is usually for anaerobic, because that is what makes ethanol appear instead of water.
The contrast that comes up more often than any other

Bread and biofuel use the same reaction and keep opposite products. In bread the useful product is the carbon dioxide and the ethanol evaporates in the oven. In biofuel the useful product is the ethanol and the carbon dioxide is the by-product.

If a question about yeast looks harder than it should, check whether this is all it is asking. It very often is.

Shaping the Answer to the Command Word

Command wordWhat the marker wantsA Topic 21 example
StateOne short fact. No explanation, no time spent.“State the enzyme used to join the gene into the plasmid.” → DNA ligase.
DescribeWhat happens, in order, without needing reasons.“Describe how bread dough rises.” → yeast respires anaerobically, produces carbon dioxide, the gas is trapped in the dough, the dough rises.
ExplainWhy it happens. Every sentence needs a because.“Explain why a biological washing powder is used at 40°C.” → because above about 50°C the enzymes are denatured, the active site changes shape and the stain no longer fits.
OutlineThe steps, briefly, in the right order. This is the six-step question.“Outline the process of genetic modification.” → six numbered lines and nothing else.
DiscussBoth sides, each supported, then a judgement drawn from them.“Discuss the advantages and disadvantages of GM crops.” → two of each, explained, then a conclusion.
SuggestApply what you know to something unfamiliar. There is often more than one creditable answer.“Suggest why growth stopped although nutrients were still added.” → waste build-up, pH change, oxygen becoming limiting.
A six-mark “outline the process” is six lines, not six sentences of prose

Number them. One step per line. That way the marker can find each of the six marking points without hunting, and you can see at a glance whether you have written six or only four.

It also protects you. If you are unsure about one step, the other five are still clearly there and can still be credited — whereas a paragraph that runs the steps together can lose several marks to a single muddle in the middle.

What to leave out — every one of these earns nothing

The name of a particular restriction enzyme. Not on your syllabus, and naming one wrongly looks worse than not naming one at all.

The base sequence of a sticky end. Explicitly excluded. Describe the shape instead.

How the plasmid gets into the bacterium. The syllabus says the specific details are not required. Write “inserted into bacteria” and move on.

Anything about modifying animals or people. The syllabus limits genetic modification to bacteria producing human proteins and to crop plants.

The time you save by not writing these is time you can spend on the “discuss” question, where most of the marks in this topic are actually lost.

The whole topic on one card

21.1 Bacteria: fast, complex molecules, few ethical concerns, plasmids.
21.2 yeast Anaerobic respiration: glucose → ethanol + carbon dioxide. Bread keeps the CO₂, biofuel keeps the ethanol.
21.2 enzymes Pectinase → more and clearer juice. Proteases and lipases in washing powder → small soluble molecules, low temperature. Lactase → lactose broken into glucose and galactose.
21.2 fermenters Insulin, penicillin, mycoprotein. Temperature, pH, oxygen, nutrients, waste.
21.3 GM Cut · Cut · Join · Insert · Multiply · Express. Restriction enzyme cuts, ligase joins. Advantages and disadvantages, both sides.

Check Yourself: Exam Technique
8 multiple choice questions. Click an option to check your answer.
Your Score 0 / 8
Question 1
A question asks: “Name the enzyme used to join the human gene into the plasmid. [1]”. The best answer is
A DNA ligase, which joins the sticky ends together because they are complementary, forming a recombinant plasmid.
B a joining enzyme.
C DNA ligase.
D a restriction enzyme.
The command word is name and the question is worth one mark, so two words finish it. The long version is correct but spends time you will want later, and on a tight paper that habit costs real marks elsewhere. “A joining enzyme” is a description, not a name.
Question 2
Which answer to “Outline the process of genetic modification to make a human protein in bacteria. [6]” would score all six marks?
A Six numbered lines: restriction enzyme cuts the gene leaving sticky ends; same enzyme cuts the plasmid giving complementary sticky ends; ligase joins them into a recombinant plasmid; plasmid inserted into bacteria; bacteria multiply; gene expressed and the protein made.
B A detailed paragraph on how the plasmid is persuaded to enter the bacterial cell.
C The gene is taken from a human and put into a bacterium, which then makes the protein.
D A description of the fermenter in which the modified bacteria are then grown.
Six marking points, so six lines. The second answer spends everything on a step the syllabus says is not required; the third compresses six marks into one; the fourth answers a question about 21.2 instead.
Question 3
Which sentence would a mark scheme refuse?
A The high temperature killed the enzymes in the yeast.
B The high temperature denatured the enzymes in the yeast.
C The high temperature killed the yeast.
D Above the optimum the active site changes shape.
Enzymes are molecules, so they are denatured, never killed. The yeast itself is an organism and can perfectly well be killed — which is why the third sentence is fine. Getting this distinction right is one of the cheapest marks in Biology.
Question 4
A question asks you to “discuss” GM crops for six marks. You write four well-explained disadvantages and no advantages. The most likely outcome is that you
A score full marks, because all four points are correct.
B score about half, because discuss requires both sides and a judgement.
C score nothing, because the answer is one-sided.
D score full marks only if you add a conclusion.
Correct points earn credit, so you will not score nothing — but the mark scheme reserves marks for the other side and for a conclusion drawn from the evidence. A conclusion attached to a one-sided answer still leaves the balance marks unearned.
Question 5
Which of these would earn no credit in a Topic 21 answer?
A Stating that the sticky ends are complementary.
B Stating that the recombinant plasmids are inserted into bacteria.
C Stating that the bacteria multiply before the protein is collected.
D Naming the particular restriction enzyme used and giving the base sequence it recognises.
Named restriction enzymes and base sequences are both explicitly outside the syllabus, so they cannot gain a mark however accurate they are — and they use time. The other three are each one of the six marking points.
Question 6
In an answer about bread-making, the marking points most likely to be printed are
A fermentation and alcohol.
B yeast and dough.
C anaerobic respiration and carbon dioxide.
D oxygen and glucose.
Naming the process precisely and naming the useful gas are the two marks. “Fermentation” is a loose synonym that mark schemes treat cautiously, and “yeast” and “dough” are already in the question so they cannot be worth anything.
Question 7
You have three minutes left, an unfinished six-mark “discuss” question with two points written, and an unanswered one-mark “name the enzyme that joins DNA”. What should you do first?
A Finish the discussion, because it is worth more.
B Write “DNA ligase”, then go back to the discussion.
C Check the answers you have already written.
D Write a plan for the discussion.
Marks per second is the only sensible measure at the end of a paper, and a two-word recall answer is the fastest mark available. Long answers expand to fill whatever time you give them, so starting with the six-mark question regularly loses the easy one as well.
Question 8
The single habit most worth carrying into a Topic 21 paper is
A writing as much as possible, because there is little content and time is plentiful.
B memorising which company produces each GM crop.
C learning the stages of the fermenter design in detail.
D naming the exact enzyme, the exact product and the exact process every time, because this topic is marked on precise words.
There is very little to know here, so the examiner discriminates on vocabulary: restriction enzyme, ligase, complementary, recombinant, expressed, denatured, anaerobic. Extra length adds nothing, commercial detail is not on the syllabus, and fermenter design beyond the five controlled conditions is explicitly excluded.